Scaffold Ga0102861_1001422

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1001422
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5093
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F005299	Metagenome / Metatranscriptome	405	Y
F008359	Metagenome / Metatranscriptome	334	Y
F013759	Metagenome / Metatranscriptome	268	Y
F017485	Metagenome	240	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F074879	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100142210	F074879	N/A	MNVSINDIKEIETQLSITLTDLQRDKILNEYNTIIGDRAESWDELIELLIVKQATIQILKDKNK*
Ga0102861_100142211	F017485	N/A	MNNNELKTKDIVEGITFILMCIAIIGMVCVLYEVNELKGLSKGASNFRSIANQK*
Ga0102861_100142212	F003691	N/A	MTNEFTETAFNTSRNERPIYRNFAASKMSQSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKEATTIKQIISQYPIKLGKVEKRFIAECKRELKQFGLTKKAIDIVLG*
Ga0102861_100142213	F008359	N/A	MKSKVNTKSLYEIKKVKRVMRMKSEGFEPTSFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKMK*
Ga0102861_100142216	F005299	N/A	MNNIPTHNPHTFDGFDSPRDIWEEKVGYDSANKKMIAKVYKHLYNVMEFTTKPSWVKIITEMLIEDNKLGKVSLNGYYSTIRTNLKDIGVIQYNGRKGLSKGPNWDRFFGNEDWSWFITNTNSGGYGTIVK*
Ga0102861_10014225	F019136	GAG	MIGEVTENQNEYCFRVGYNGIPYTIKIFRQGTITKEYEVVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVRFKPKAQTQTNNNINYFPS*
Ga0102861_10014226	F017826	N/A	MERLKRIWNVVCVPTAFFLGALNMWIGETAVGCLFILFATNETINNKTI*
Ga0102861_10014227	F013759	N/A	MRVEFGMSVFSKRETLLGLEITTHNGVSVKDGELCSERVVEFSIGICFAIFTIGFVTLGNKIETPDNVLKAMKAFESELEK*