Scaffold Ga0102861_1000529

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000529
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8252
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F043358	Metagenome / Metatranscriptome	156	Y
F049618	Metagenome / Metatranscriptome	146	N
F073557	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100052913	F000919	N/A	MRFRNIEFRWSTYNKKHELVKWYKAEVDGCEERNYCYVVAFFDKTNSGYDMRTVGDRFFEDKDAWVVGKYGLEFLNEIFEIEKNEEELK*
Ga0102861_100052914	F043358	AGGAGG	MKVYDYRIVETFSLETIKPYFLIEYYHLTEKKYHLYSNVSFQTLEKAQEGIRLIRKYKEPVYHYDEDEK*
Ga0102861_100052925	F049618	GAGG	MRIEITYTPHPTKGYTATIWDGPDGIDEADFLCSSLGECFEQIIIFRTINAQKYYGGTEND*
Ga0102861_100052929	F073557	GGA	MTDAQICEMVNMHRYLMRCEIRHALDKVCAENGNQDYSAANRSEAFNDKEWIKFAQWFKDMRDE*