Scaffold Ga0102861_1000414

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000414
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9553
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023555	Metagenome / Metatranscriptome	209	Y
F025977	Metagenome / Metatranscriptome	199	Y
F083779	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100041411	F025977	N/A	MIELFIRLFSEGLSPNSFYVLYCIKENIVPHGSVNKELECKRLQTNHWLSESFELTEKSIIFITEIDGYFKKSKKRTSKDLMGHNFMQNIDAYVTIFPNKKLSSGKYARVPAKNLESGFRWFFDTYDYDWQTIFLATQKYVLEYESKNYDYMRTAQYFLRKQNIDKSWDSDLATYCEFLKDNPDEDKDVFGELIV*
Ga0102861_10004142	F083779	N/A	MEKMIFSKEETRNLIMMLQSEDADNHTIAYESLKNVDFNKYIGELFVILKFGGHGLADWNVGCKKIASKLEKLISNQTPLSSPKTLAMITQNKGSKASVELFMEFFIRDMSRMLESIGYPTDKFEINIKFKN*
Ga0102861_10004149	F023555	N/A	MSSNIRKEKEREFYMQHMDTFKAIGLADPFFAIKTAFFKKGKFGRQCQFFEWELKKGEDIYIEFYDNVYDDNSKIIGMTPMSEDRQLFKLKFNPFYDEEYELIESYDSEGKIDKKYLIPVNEMMAVLPSGQEISYSLYEKRKEEAKLEVPQLQKSLSIFPDFEEEFAPKVEAEISNEEIADAPLSEITIRDLAAIMLMKPVSARPWLNDLIKQTKSEI*