Scaffold Ga0102861_1000380

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000380
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10159
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100038010	F009958	N/A	MENRNLGVWNRGWELLYEFAGWQFSIAGTWEFNDWDEVSEYAFIELDVEVSEKWIIETDDHLQPHVLGVRLLEDLRLEMQEIINSDLANYNFWEWKTSNDDSNYNFYHEL*
Ga0102861_100038022	F007860	N/A	MLVTLIKYKMKSNYLAGLYFIAGFLTSFSLICQGTELYINLAGITLFFYLTFSLTEALEDLGL*
Ga0102861_10003803	F005814	N/A	MELELLSSRINLNHTCLKLQVSIDEIKAKNPHRNDLITSMEQTLHEVKKAIFIYQTLEKEFRATRQINFDLQHLNLELKQEVKDLKKIIEFNNAEL*
Ga0102861_10003809	F006463	N/A	MTSGTIYDQLDWWQRQWRGSFDLGLYLEICRIKKNEQIKFKTMKRFKATFKTWAYVGAPVKLETRIVKAYDFQHVKNLIQKNDDIIIEIKQIEQ*