Scaffold Ga0102861

Basic Information
Taxon OID	3300007544 Open in IMG/M
Scaffold ID	Ga0102861_1000360 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007544 Open in IMG/M

Scaffold ID

Ga0102861_1000360 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10565
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.79%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10565

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.79%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004451	Metagenome / Metatranscriptome	437	N
F012974	Metagenome / Metatranscriptome	275	N
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100036010	F004451	AGGA	MRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLYDKIRDDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKTDLKNLRDEN*
Ga0102861_100036011	F012974	N/A	MFTEAEQVIIEQVFNLPEKEQSYKINLIKLKPIKIRLTGTPDKECFCGSVRRKIWLKDFKQWYETYT*
Ga0102861_10003602	F046370	N/A	MATTIIAQPQVLMPAYNPIKYIIDNTNKNEPGFRYIFTIYPAAGSHIPANVVAQYRVLPVFSTGYGEQDISRLMQSLVTWNFAPGQVNESWYLYDIDLGYEFIDNIDYTSALTIDGLNTNIAYTAHGFQVGDQVVIVQADGGVANPALEGLHTVIYAAANDFTVNVLWTTIGDPDINGNVSYADQRKTQVLDDELIEDQEVFNGAYSLGIYAQGSFPSAAYLGTLDPSYALTSLTNPNDSFAVAASITDNIFYLMCRVYSGVEYILQYYDSQGNAIGQDSPYNPTDGLYNFPVNTATHSITEDFYITIKANDVAGTEFEYYFSYDNRCAINEDILYYLDRMGSWQSFNFQLKTYEKGQISREMYNQHVDGQVTDGQWVYSPDAMGSKTYNINVSNTLDLNTNWMDQYNANRFQELLTSPQVFYYNGTDTRACTIEATSFENFRQRNKNLIKQSVTIKLALNTPING*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102861_1000360

Overview

Ecosystem & Geography

Associated Families

Sequences