Scaffold Ga0102861_1000215

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000215
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15021
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F048248	Metagenome / Metatranscriptome	148	Y
F053077	Metagenome / Metatranscriptome	141	Y
F064715	Metagenome / Metatranscriptome	128	Y
F074450	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100021512	F048248	N/A	MKISVNYDDTDVAKALGKIIKDSNSEEFIKLFTPIICNSSQTCEHFFKLILGNKLPDIISNGTLCKMHYSNLGYGVDKEATKEKYADQDENVTVTVKQFRGYHEYSPYLVECMVVTGAGLTRLDTTYAQTKDLEIIEEF*
Ga0102861_100021513	F053077	N/A	MYYQLPNGKVIYLTIEQYLELTDQDIQYMMSLDSGDHIIDPFADSAVIENTKEKYYDFDYLPDDESFDNIISDDTPFDDIIDLSDNLDI*
Ga0102861_100021515	F000716	N/A	MIKMEKLKQQIRNYQLQSGKTYMQYEQDKYSIYQNYLYKRALYGLDALNQEELATMCSKKKQRIVNVYKRAQVVLNTFKQKLTIKYSNSLFNILFPNSNLTKELVNLNETDEKFKNTLTFKDLNIDKDQIISIFIAEGILPKNFLSLKEAPVSLPMLKNANKA*
Ga0102861_100021527	F064715	N/A	MSKVNTKQIKDVADKSEVIGNKAYENFNKNGKLEAGKLAIAAFKNTLYANSLLIKTEKI*
Ga0102861_100021531	F074450	N/A	MEDYTKEDVLQALSKITLNVRKRVLVDQRSYLIGILAYRFMLSEHTIAKLTGLNRNRVNYNKKLALDFYKDKSYIQNVYVYAQMFPFDFSVIMRGGSISDRSVRVELDLDRKFYNKLKAAGAIKGQSDIRLIIKFLLEKSLTIWEE*