Scaffold Ga0102861_1000198

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000198
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15530
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012978	Metagenome / Metatranscriptome	275	Y
F014137	Metagenome / Metatranscriptome	265	Y
F015599	Metagenome / Metatranscriptome	253	Y
F015729	Metagenome / Metatranscriptome	252	Y
F016809	Metagenome / Metatranscriptome	244	Y
F021108	Metagenome	220	Y
F022884	Metagenome / Metatranscriptome	212	Y
F062761	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100019810	F006935	N/A	MDKRYAKQIIEWAEDAKETLTIRKEIIIDENVTDEKLGNIIRMMYKAKVETQNETILKTKQNLEK*
Ga0102861_10001982	F014137	N/A	MLKIKNIQTIIGQEYNEVFNIIGVKEHKDHYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTTDKIIICMQTI*
Ga0102861_100019823	F062761	N/A	MGFNHCYLTNVEDLQKYLDNVGLEKFIKTYRSYDALTGPSECFEFLENKIKENEKVISNNDIDGILQKGIDNNASEQSNYTNK*
Ga0102861_100019825	F012978	N/A	MEKKFLKTEEELKQMNDSDLFEYLDAKAAYLKQYTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE*
Ga0102861_100019828	F016809	N/A	MSKTNNEFMKQQLTGSIGGDEDFLYEQYLAQEKMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGHT*
Ga0102861_10001983	F022884	N/A	MLTINNLNKIVRYPIGYSFRVKSMVCGHTNYHISLIDGKGQCRDLKLNRMKGRRDKYTLSHGNHFLYLKFSDIHNLDFFCKQLKRLIC*
Ga0102861_100019831	F021108	N/A	MAQTVATQMNEFRKLDDGRIVLDGLVWSNNADKAIEITDPDNGFKVLNIKLDGVTYYPVGYDKRKKK*
Ga0102861_100019832	F015729	N/A	MRRPKNFETIDASDFEIHGHSFHTDLDQLQNKEKSNWVWVFPSGGILGDYVVLFELKWEHDCYSMKKCVLGEGNTGNYIFQDNWISTKWIKTKDDFVNHIQSTIEKEMSVGTFEN*
Ga0102861_100019836	F015599	N/A	MKLTIKNYEKLFRKEWDDKNYIEDIIENKDAYSITVWRGHMRHFIILNRRPVENGYYTIGKWSNEAFCVRYPYWIKHEDIVNINSLMDKLKLMTDDWTPKLL*