Scaffold Ga0102861_1000160

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000160
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17717
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (48.28%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F052965	Metagenome / Metatranscriptome	142	Y
F057371	Metagenome / Metatranscriptome	136	Y
F080037	Metagenome / Metatranscriptome	115	Y
F106141	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100016017	F021761	AGG	MITNPWVNRITALVVLAAIYAAGYAGGRDQATLAHHNHPACNTNLKP*
Ga0102861_100016018	F015082	N/A	MSESDIYWTFVTASKYAGSFYQAMGNAGLAADPNNKRRILAAFPEMVATYGAASRLHQTMRAGVAA*
Ga0102861_100016023	F052965	GAGG	MGKPDLIELAFRDWWEESYKRPPTAQAVMTHVAFAKHVLQLVELLEVVGDD*
Ga0102861_100016024	F106141	AGGTGG	MTKTRAVFFQKGENRIVIWTNHTRWTVTDMVAGGTKQYTKQLAMALSASLMAEGYEATVHG*
Ga0102861_10001606	F080037	N/A	MTQAMAYAWAIRDNAQDDGVPIPMELVASFQDDYNNIIAALNEAHNIAS*
Ga0102861_10001607	F057371	N/A	MQEIKVRFEPADLTALDQQAAAAGTSRSAFIRNKALSLPVARLNTVEYHALVADAVSAMRGDLPRQQVEYLVAYVITRLDQHSRQAVAGHQPLA*