Scaffold Ga0102861_1000102

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000102
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22329
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.23%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100010211	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0102861_100010212	F013879	N/A	MTPTVTVDTSRFDEAWKEYLPKTKRSLADAVNARTFYLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRYDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVAMHKGSSANTQKARSGINPSSQVRMNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0102861_100010213	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0102861_100010214	F023575	N/A	MAQSKGLALVYGSKGTIQLFNQTGVSPGTALSGAISTIESYDVTHEADVEQIKNSAGDVIAQIAANERISLSVTFIPSSATSAAIALTGASLPNVNGYAAIAGADATTYGGVSINGNYVYSGGGSVKFTSSGKAMVTVNLTKYPSMAGDATVYTL*
Ga0102861_100010225	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKLYAQRVTFRSFDHEDMDAVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*
Ga0102861_100010228	F039136	N/A	MTIEIKYTASVFTPAGWRGVTIKATATKTSEKMAVVVEVLEINGDSPKSKMSRTGASRQRYNGNSISCREVGAKKRLSACEILN*
Ga0102861_100010240	F058715	GGAGG	VSLLEKLGLSKESMERMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHQSYTCRELAKKYGISASTIWDIRDSKSKTE*
Ga0102861_100010242	F059002	N/A	MNILNEIKSGISRLLGVHKTLETKEAPRTLKPKRIQKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSNKLRLN*
Ga0102861_10001029	F017997	N/A	VNFIEQIVTALLKWLTSFVQKPPTVEDAKRDPDLKKKLLDRIAESDR*