Scaffold Ga0102853_1009872

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1009872
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10098721	F043399	N/A	MFYDDFPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCENNGIDVQEEF*
Ga0102853_10098722	F018927	N/A	MKKHIEITRHLTVDGTSTFYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEVDRNGVKHIIPIGNELLEVN*
Ga0102853_10098723	F013084	N/A	MVILSMLGLMEDTKNVVLSRGHNVKNWLVLGNDCYALECADCKKTVMIKEHPLPNEIKVGGEAVAVNCVKPVKEKKLRKK*
Ga0102853_10098724	F007310	N/A	MRAVYWNNTERWFNHHHYELLIEDITGFDLKKSLCEESVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFNNQAEINGKIEVA*