Scaffold Ga0102853_1008853

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1008853
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F023344	Metagenome / Metatranscriptome	210	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10088531	F001460	GGAGG	MLGYEKKDLDTMINSVHDAKLFYLRSPSDLMDKTELRTNLEMTVSFLQGLWAEGYFY*
Ga0102853_10088532	F053291	AGGAG	MITSQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEAIEC*
Ga0102853_10088533	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEAYAEYRFMQFAPDTLKQSYNEYYGYIEGDEFLL*