Scaffold Ga0102853_1008448

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1008448
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049942	Metagenome / Metatranscriptome	146	N
F101177	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10084483	F049942	GGAG	MDKDIDYLNDLDRGEFDCREGYPHKEGQSQAYDIGYGARYVLEQMQLAGAIE*
Ga0102853_10084485	F101177	AGGAG	MYYRDEDTNRTGSPDDCFNSFMSDITGGRSDNIEDYEKRPIMPEPSQYALEQEAIRKAEHQKDLDYFMRRQINQFARSSEQRDALLKQHGLEVE*