Scaffold Ga0102853_1008018

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1008018
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1640
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005578	Metagenome / Metatranscriptome	396	Y
F007226	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10080181	F007226	N/A	MQKLLNKITIYFLQRAYTQMEATNDLQNADKVAEHIEDYYTYFVK*
Ga0102853_10080182	F005578	N/A	MNYKVELVSDEDFEYDGDWISATDELCVQTNKVLENYFTLNDKTVATAFETAIDYRYDDDCINEGISEHFYDYCKKHNILDFYFKQKDAHDYDGEDANMRM*