Scaffold Ga0102853_1004006

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1004006
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020904	Metagenome	221	Y
F040107	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10040061	F020904	N/A	ELDSDYNKSKVWKAAMLMTKHIGSNFDDFAKENNIELKRDINWAVKMVEYGKMVSREGNPSLTLFPKKYDHAESTITTTDLFAEDWVIVPNKTFEDVLDDLYAGKTVRRKSWHSDWGVGKYARYGKIIYLDFIADDWEVVDVVAEVNKQQEQILKDRNEH*
Ga0102853_10040068	F040107	GGAGG	MTGIEALSLLKEGKILRRESWEPHEKCKALDFFGQWIVHLVKEQDDEKLDKELESIFQNSFTFTKTTFDDFFGLFDTIDAGDFLHDDWEIVE*