Scaffold Ga0102853_1001955

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1001955
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3097
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009530	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_100195511	F000447	GAGG	MGYIEIFRMDQDGAGWVDLSEATPDELFTIEVGLLNEGALFYTPEAE*
Ga0102853_100195512	F004840	GGA	MYKITCAYDGNAPHWSAEYENEYGAWENFFLFTDWGFADEYSTVNLYTPAGKCHTKVFYRAGRKVVIK*
Ga0102853_10019553	F009530	GGAG	MTIKYSIWQGSKLISIDNIAHDVNAIDHLIQSLNNSELGKGKKFTANVMYIKVTA*
Ga0102853_10019557	F001562	AGGAGG	MKSQLEKDIETKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFAIGLAEHEDYLAEMENE*