Scaffold Ga0102853_1000224

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1000224
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10087
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F015209	Metagenome	256	N
F057375	Metagenome	136	N
F095470	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_100022415	F011760	N/A	MVMRVRIQDVGNRSSAIEYVGQGVWFDGKSYIVTRYKSNPSVFYFFVYNDFVPAYNYFDEMNAGIGNEIWQLNPENGNYSGKTFVYSSMLDKMYDPYAVNPVVESPSFLFEIH*
Ga0102853_100022417	F011390	GAG	MMKIQTTNYGLCSVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANYYNMGATLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIVDID*
Ga0102853_100022420	F095470	GAG	MKKVMWVSDSLEPWNHSHHYEPLIEDLTGFNLTENLCSETVKYMAKRLKDTPYQRRFRSKYSIFENEYVALVEKFNTQADNNGKIEVK*
Ga0102853_10002243	F015209	N/A	MNSYRRKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGEIEDMELVIVAKPIDDVLRNIQVIP*
Ga0102853_10002245	F003750	GAGG	MTLDMVNRLLYLVVWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFVGCLAGVGLLCGIWMVMVQSSRELQGKKQYKYVVL*
Ga0102853_10002246	F004476	AGAAG	MLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHSDGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTNNNISTLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN*
Ga0102853_10002249	F057375	AGG	MEQTVHFVNASDFFDAIELGSAESGEFLEQFTYGDSLTDITLVARTTFLQRLTKFIGECEDIYEKDVVMQSLKEFNFGLLGAIKHVNIEM*