Scaffold Ga0102853

Basic Information
Taxon OID	3300007543 Open in IMG/M
Scaffold ID	Ga0102853_1000069 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007543 Open in IMG/M

Scaffold ID

Ga0102853_1000069 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23834
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (44.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23834

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (44.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F039635	Metagenome / Metatranscriptome	163	N
F043397	Metagenome	156	N
F054860	Metagenome	139	N
F100477	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_100006924	F039635	AGGA	MTEAQANKIKTRVEDFNILYAPITLRFQMFSTSETNWAVTITYNYTPEEWMTFVSLDSNYNHVNDRLSGFQFGIESVEAYQEEHGNLKFSHSGLPLG*
Ga0102853_100006925	F043397	AGGAG	MPRYDVYIPFTCSYEGEIADEDYSTIVKADNEKDAIQKALDELSSEYVVKTLNSDEITVEEIPTFPSFDEWEEKYTALNNPHAREGEQGLGEIMFDTDGDEYQTVRGFDSSKIWTVRSTEYGLMLTAGFGVVDRFGYILSEQSFTEEDKDKAFIID*
Ga0102853_100006927	F100477	N/A	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV*
Ga0102853_100006931	F054860	AGAAG	LNITLKNARINYQNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVTQFREWCSIQPPVYDRQSGNTYKYDADIHVNDCLTQYIGNQSKVAVS*
Ga0102853_100006939	F039139	GGTGG	MFLNSFEFTTEDITTILRAHDTDISIQELVEISDALDYDSIARTALMFDDIESQTQASLSHAEDLMIMDGLWITEPKRFQMP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102853_1000069

Overview

Ecosystem & Geography

Associated Families

Sequences