Scaffold Ga0099846_1015350

Overview

Basic Information

• Taxon OID: 3300007542
• Scaffold ID: Ga0099846_1015350
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2998
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F035302	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099846_10153506	F035302	AGAAG	MKRPYTGSKDGIAAGETKGLRVFINQMTKMYPALWNNGSYVNRPMRGKKTLSVHATGRAVDLSYRHMPKEKRGIAEGGRKQAMEAINFLVKNADAFGIEAIFDYFPMPHGRGWRCDRGSWSIYTKKTISGAPMGDWIHVELSPAMSNNPEAMREAFAKIKQEAV*
Ga0099846_10153508	F006986	N/A	VTAVLVTWHDAHSGSESWVNIKDLDLDPAIVQTVGFLLATSDGGKPDHVTIYQSRNEDAIDHVLHIPVKMVVGIKVLMDLEINSENR*
Ga0099846_10153509	F005528	AGGA	MRILTAILATLTSLTISLGIAQAASAPAHTSDAVNALQPLWQPTMTDRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHAIPKLTELVLRESGACPNRKGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDKSRNKWAAVCRQMNICTQEPLLDPLTN