NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099846_1011033

Scaffold Ga0099846_1011033


Overview

Basic Information
Taxon OID3300007542 Open in IMG/M
Scaffold IDGa0099846_1011033 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3571
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F027834Metagenome / Metatranscriptome193Y
F027835Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0099846_10110335F027834N/AMKNFSFDEAMCFAYGSTMLTGGSSLGLMDNGEYYLPKYGYVVGGIVPEKFCKAGNEANFKEVYNRLFLEATEELERSLAIVMGTWVEQRENGKYIVFDLCNVLDDMKGALELAAKRGERAIYDLEEQREIFVNYK*
Ga0099846_10110336F027835N/AMKTQRQIDALYERMKTAGGFECALIMAYMKADNGNAQLLEDAFRGTRFDLLPKPRFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDDQPIDQHFLARLQ*
Ga0099846_10110339F018534N/AMALPTLTDFLNSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAYLVAYDEEGNRVSLRNQTYGCFGDEEKQFHQWFAKKMG

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