Scaffold Ga0099846_1009145

Overview

Basic Information

• Taxon OID: 3300007542
• Scaffold ID: Ga0099846_1009145
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3944
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099846_10091452	F006743	GGAGG	VRTENWQGNTRGLRLVGEGESGSASTFFGPVRAGLTTSQATSKEAQLSELLSSLEREVENLRSKYCEAYVILISVMEHLVKLNSLLLNTDTTKEGEGV*
Ga0099846_10091453	F051794	GGAGG	MKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKDILEQERLSDEANGKTWLDITGATSINSSLGVLTDRNNDTSRSEQANGDKQNEGNVGGEG*
Ga0099846_10091454	F005146	AGGAGG	MKLINFYEVADRKGDTAWGGASESEAVEWFRRGLDNTISVSVWNEEDIEEPKLVIDKIDITRLVLTTIVSERGRG*