Scaffold Ga0099846_1007643

Overview

Basic Information

• Taxon OID: 3300007542
• Scaffold ID: Ga0099846_1007643
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4329
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F013279	Metagenome / Metatranscriptome	272	Y
F040479	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099846_100764313	F007691	GGAGG	MDTLEQLINEIYEDNYSHLEFDEAMGGEGCNCPIHTTLNTIVKYRDGKEGE*
Ga0099846_10076433	F013279	AGG	MQYDYRCPECNSELTIERSIHEDPREPSCFDCHIPMVRKWASPAVTFKGKGFYSNGG*
Ga0099846_10076435	F040479	N/A	VNPASTTLLAQETLRANQEAQLLELLSSLESVVESLNYKSFTVYDTLVTATEAVRVALLHTPIDEAGTDV*