Scaffold Ga0099848_1012705

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1012705
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3695
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036720	Metagenome / Metatranscriptome	169	N
F060729	Metagenome	132	Y
F060933	Metagenome / Metatranscriptome	132	N
F068898	Metagenome / Metatranscriptome	124	N
F097404	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_10127051	F097404	N/A	VQKRIKNHPRKSQQSSFQVTNNVIQLPDYTDKQKIVTKQGLRIVSTVDNNLFPQKVSKLAKESSTLKAVINSFAEYVSYGSLLTENMQLERKLTKDLNKYYNWFELAKRVAKDRRTYGYGFIEAIRKGSEVFVYHLDASQVRFMEYFGEKPEAVAISKDWNDTRIRPIERTLYPNYDEEGRTIIPIMEYESGMIDYPLPMWSGAFFDAQVESLIGQYNANQFENGVTLSSILMFDFGDTTDANGDAEKGLARQKQKLESQLKGTSQGRSGKSLIVPKSGDVEAPEYITYPMQKEGSFIELQKLVENNIVKACSWFRSLAGLESAGVLGNNQQLRNEWELAERLIRNEQDIIMESLQKAFKNTPYEGEVSFNNQSPMNVVNDLAAITTLLEKKDIIGEAAVYELLMMMGMDDEQAKTIVGNDSE*
Ga0099848_10127052	F068898	AGTAG	MIASKAEIKALAFSNTFDINAVKDNLIQLVEWEQVLSLFGADFYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPTLWKGEPKHDEIINKIIIM*
Ga0099848_10127053	F036720	N/A	MDSTYVQNYFTNGIENSFILAAFFFLFLAFVTSKWFQFTIRDRYSDRTPLDVSFSFWWLDNYNSVVSFFLMCFPIIVFTEDLVHWLGLNFLPDAMKTENPMYIYYIFGLSFGWVLEVILKKAKLIRNAQK*
Ga0099848_10127054	F060933	AGTAG	MDKVIISAILLIQAFQTESFKSKLIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIFTAIAILIISLFVRRWWSKRFK*
Ga0099848_10127056	F060729	N/A	VKLHELKDKLSQLNLKDYDGMHLGSGTIIDAKRFVENHISFLESNSNNSTFLLYYNRLLEFYNKTQNNEL*