Scaffold Ga0099848_1008431

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1008431
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4605
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F015587	Metagenome	253	Y
F042858	Metagenome / Metatranscriptome	157	Y
F056536	Metagenome	137	N
F105068	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_100843111	F105068	N/A	MDILYFTLTTEDAVFKFQVNKAENLVRVTKMILKAKCQGEWHRSTVMSLETGRKLVRQLQLQAR*
Ga0099848_100843112	F042858	GGAG	MAIRKNLAKTLINAAKAVESDQSKERIQKWVRDSRVKIAKAIEPKD*
Ga0099848_100843114	F001806	GGA	MEAGTRQKRVEALEAIKNEALKRALEGKDSFEVRDFVTSAKKELAYELPDEEAFKKAMNATLAYKAKKGE*
Ga0099848_10084317	F015587	N/A	MTKLNIRKNTAQLLKMTATAVENAKVPTKAAMSEKLNEYRIRAAALMMPNDMAFVIQPKKGN*
Ga0099848_10084318	F056536	GGTGG	MLCYYPYEGATERITWHGGESTMLRYEVEVDDCYGNPCWIEREVQTLGGGIPTGTKELLAAMSDYYQHITTMQLDNLYATIF*