Scaffold Ga0099848_1006776

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1006776
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5199
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023360	Metagenome / Metatranscriptome	210	Y
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_10067761	F023848	N/A	NHFGLRDGIDINNSELTIKFPNGVFIRCKSAEQRENLRGLNVGIWIADEAALYTMDTLQEITNRLRPSVGQPDTAGRLIVISTPNGTGPLYDLFKMAIDKPEKYVVRHYNYEQMRSGNREFIEEQKRILSPLKFQQDYLCSWESVADQFFYAFDKHKHTHDDIVDRGGDIYTFHDFNKRVMCAIVAQVTNEGKNNGKIEILKSYAIKDCSTEGIADSIRNDFPKRRIYSIIDMSGTQVNRDTTSPFGMTDRIILEKYGFIIVNTTKANPLISDTDNTCNAFINRNGLSVNVNDKYLLEALTTYHFEDGTRKRLVKYTEQKYAHIDGLGDALRYGIHHLFPITHDDLGIKEYVGMDPRYARLTRPGVEHLPESPLYPGGPTWEEIINGDEGNENSMTWQ*
Ga0099848_10067764	F026558	AGGA	MKAKDLIKKNPVYIATLEQMIAYQYAYLGGYVFKSYVRKKRPSEDSNLYLDLIQNTVAQPICRYIVDTINDVLFEPGIKREMNFATPTGTYIDPKNCEWAQLMLLDADLQNRSMDGFMEQVGQLTSIYGHCWVFVDMPPVEEGNLGRPYVVAVNPITVWDWEFEFFGGKPLLKYVKILESETETDYYIKCYHLGTETEPSTWVNYRCGKNLEKDDIEVLGSGTYPLGMAIPGFIAFGRRDPRRYDIGISDIDSASDAMREYYKLEGEAYTAIQFAHTIIRAEKGISIPVHAGSIVRATQGQVESISVDTGDVDKIIAKQQDVLQSLEGLTGLGGLRNTKNQIASGVAIIEERKQLHRLAKTKARLMEVTEEMIFTFAARFMNMRWAGEVHYNTDYEAHDTNYRLALIEKAKSLVPENPIIDSLITKEIITMLAPAERIPEYEQAYIDTITEPDVKTLMTDTNLEVLTRDLVPQTPPPGEVDVVPEGTLPGYQEDGENVGVGTPITPTGASYYTNQAIAVQLTGMNTGR*
Ga0099848_10067765	F057213	AGG	MITNNQEDIMNENFAGNDIAETEVAQDNATPETKVNAGAIRKSTTSTILNALSQASGQQFESVEAALAYVARTANQKTGGNAQPVESETPEPRMGREVVSDNTDLREQFAKLQRDLASKERALRQKELDSEILRNMGDKFDPDLTDYALQKVKSNIQWKRDGTYTIVNSKGQERYGMDGNPLTIAGLIKEVADGNPKLLKQTNLSGGSGLRPGQSNFAGAPVDQIPAYDRDPAAFNQWAKNMGLGKGLGLKNLKVAASNSTQSKKII*
Ga0099848_10067766	F023360	AGGAG	MAYVLGGLNNESDGFTFAIANFALRAMHESTGLVNYTTVVAPNQGNQYLVPLFAPITYADYNPAGAGGTTGFGNANVQNPALGQQTITASPTVAATGFDIFYAWTTSFELAATLGQELGESYGEKVDQRVCAAFVGDGGDTSGFKATPANTNYAASAHGFTRPSALGAMELIADAQTSGTWTNGFTSNTVLGLIRNVKQNYKVARLPGTPVIVLDSNGNSATVVGPPASALSGSTMNRLLGELTGGAV