Scaffold Ga0099848_1001668

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1001668
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10403
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_100166812	F001841	GGA	MSLFNPPNFFLGLMRVVAWAFWRDPVAKPEPPQPKRPRKPILGYTVGDIPFELFAVIRIEWYRKGMTYEVEEYQIEESDDASAQFHYIVGTALNQGADVAVLTQYEPAALGVPE*
Ga0099848_10016686	F021513	N/A	MTMYILSEKQFEQMIKALDDARFALDTCQHIELDLTTSKDTVTLSPAKKSVRTPSVQKTQAKTRVSSRKGQRGVAVLNEAKVLEIKRQLQAGGKSVAKIASDFGVHVTTVNCIKWGKTWKHVQLQQEVTA*
Ga0099848_10016688	F014614	N/A	MNYDAHERYYRESRGYNWYDMVQMRTSPRPTSAEVPDCFKHQFADRAAYDAWVEEKRRDYFG*