Scaffold Ga0099848

Basic Information
Taxon OID	3300007541 Open in IMG/M
Scaffold ID	Ga0099848_1000148 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007541 Open in IMG/M

Scaffold ID

Ga0099848_1000148 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29368
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (37.21%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

29368

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (37.21%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030796	Metagenome	184	Y
F033783	Metagenome / Metatranscriptome	176	Y
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_100014827	F030796	GGCGG	VSQFTKNLELNTVVNSGLTDASRRTGSTHFDQRRILDASGVVVVDSSSRTYAADGSYGISDYYPLTVNATGILQVDIRDQNSCGDVIILDSSGEEVMTASPSKFSSRNSTVTQQRIASSGAYYAYIQLKGRSGSEYRIGIDVQVQ*
Ga0099848_100014833	F033783	AGG	MYHSNDFPIRMAGQRLNLDAVRLAGTTPSEITRRLRYQEAFPKS*
Ga0099848_10001484	F034542	N/A	MYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDANTYAVKLSSTFGAPISFFTGEVLSNRFNADGTDKQYGFNNYTVTAVGIDNVPVPPSYAPIFNTLFLSHTDNTSWAVVNENTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRRKYPRTRPQNFDPGYFDAGVDGSPRVVPSSDNPGFVRTFGFIYINQIYNIPSFSEATYSDPNFFYYQPKWCKHIYAAMWDLQRAYDQGVVTGPWLPQPTDEPLNEYYREYFEKELERQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLSGPNTLQGASFEMFTIDEFNPFDPASFVVGTYDGGTYANGVLVNQPTNVFDGGQYLNGVIVPPAGFPSLINGGVY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099848_1000148

Overview

Ecosystem & Geography

Associated Families

Sequences