Scaffold Ga0099847_1020181

Overview

Basic Information

• Taxon OID: 3300007540
• Scaffold ID: Ga0099847_1020181
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2173
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F005743	Metagenome / Metatranscriptome	391	Y
F026152	Metagenome	199	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_10201811	F003834	AGGAG	MSSTKTPIRQAEMDHIDHFLETKYDDRKNSLKTEMQDIIDKEAEENFEAFKNKLNINKMHKEVSILYEDHKKFANEMDSILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKEPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMS
Ga0099847_10201812	F050676	AGGAG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVAETQSLKLLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSQINNQKEIA*
Ga0099847_10201816	F026152	GAGG	MKKTPKHWTAKAWAEHMLWISGFTNNKEVNYVQSNNRRKVSRKSNKSKQSSQTSV*
Ga0099847_10201817	F005743	AGGA	MTRNLIVYKVDYVNRHEDYNTQTGKFVRTKRIVMTSDEVNQTDGYWRNHSRVERKFDKQMNGNKEGHWNSKYRVMRVRKAK*