Scaffold Ga0099847_1009599

Overview

Basic Information

• Taxon OID: 3300007540
• Scaffold ID: Ga0099847_1009599
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3203
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007825	Metagenome / Metatranscriptome	344	Y
F016897	Metagenome	244	Y
F054159	Metagenome	140	N
F059444	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_10095991	F054159	N/A	MTKKITLKYIDNQSHGYIQISKYDLEGLDIDIKDISSQYSFYNENNACYYLEEDCDANKLHTQLRLKGYEIFDYKTNHVALNYMNDPIFKRLSNDI*
Ga0099847_100959910	F016897	GGA	MLKITKQLSKRELAKILFNTLKKENGLAIRMIVRDYNNKQMENKNVKQIRRLATNS*
Ga0099847_10095993	F007825	N/A	MTIQVHYKTKKELKNNVGSELDYSETNIFKDEYTSSGVVIGCDVDRKWFAKITIKNNIIERVQ*
Ga0099847_10095999	F059444	N/A	MKKEEEIQQQIYEIESQYPNLHIDLHRDQFKSGDVDKLHLLYNQLEEVKKYGDVNQGLGTWNGYEYVKNN*