Scaffold Ga0099847

Basic Information
Taxon OID	3300007540 Open in IMG/M
Scaffold ID	Ga0099847_1003008 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007540 Open in IMG/M

Scaffold ID

Ga0099847_1003008 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5820
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5820

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1

Long. (^o)

-76.0972

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F008346	Metagenome	335	Y
F018155	Metagenome / Metatranscriptome	236	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_100300810	F006845	N/A	MDLNSYLLEQDFEEYCRFAYDKITSACEFLGIINDEDYESFKERCYSELETNYLNSIEKTIH*
Ga0099847_100300813	F018155	N/A	YLNWAWFLIRRVIVGQNKAAVEKRRKELEFEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA*
Ga0099847_10030085	F008346	N/A	MPIKLKPSVKIRDRATGKLSIEHYYLKCMTLKELNDYIESPSAKKKVIQKCKNELVRRGI
Ga0099847_10030087	F002221	AGGA	MSNYLEDSLKDKLKQLRFYENEIKVKWGNSKRIYKMVGVDFEIKFIKAEQLLKKSLREDSPKKQIAMVEMMIRAFEQLNIKCEESGYNMIQPNVRCFNFDKKTVLVCDTDDEKPLLEKIHKDEKDIMIFSIEELLRCIPNDFMKAKELLSKLDKSVNFQRINYV*
Ga0099847_10030089	F058166	AGGAG	MDILGGMSNSNGDSKDYYLAFKTADQKFFVNGKTPIDIKYLQLDPATFKSGWGRYAGEYQYQWDSKFGQASPKPSEDWKRAFSCVVMPYGHEHALIWSRFTYAESSAFNKILTGFWNQMDANSGSLPVVEYLGSKEIQVGIGRSSELDFKFSKFAPRFDGFEIPPFYDNDGDTLEYDGFKSPNEGLADKVAEMVSQNELTDDDIPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099847_1003008

Overview

Ecosystem & Geography

Associated Families

Sequences