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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007540 Open in IMG/M |
| Scaffold ID | Ga0099847_1000514 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13214 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (78.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015477 | Metagenome / Metatranscriptome | 254 | Y |
| F025294 | Metagenome / Metatranscriptome | 202 | Y |
| F046983 | Metagenome | 150 | Y |
| F085562 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099847_100051411 | F025294 | AGGAG | MMEASNETVVQPDSVEPVTDTAQSEAVEQSTSTDTKSENTTPSVEHRDGKLFVNGVRVYTRDDTNKIAANAKNEVQKNILNELNVDSIDQVKQVVSTLQEVNPNEGESLNVESLRDAVKKREATVEELKAQVTSLKTDLMLKDHMSQLQNAMPSTWTPTQRDSVIKLMKADGMLAVEGDTFAIRNGNDFLTTDGETPDYAKAIEIVGKDKLGLSFGKKGVDIQYGETTATSQSGAKAPVDEVKLTDNADYRSAYMRIRQYQPTLSRSQITDSMVKAELKSMGK* |
| Ga0099847_100051426 | F085562 | GAG | MDDFTKKSMEKFDKSTVRAAEKLVDSSSELKKIRSIKDGLTPREITTGANDQQYKDGYDKIEWGKNKSKPSFKIRVNGKIINDEEE* |
| Ga0099847_100051427 | F046983 | AGGAG | MKIPESWKAESSQKTLGVNTMSLLGLSLLWGHMLNLISLWFLPLTVITLLAGFGNEIRKRDA* |
| Ga0099847_10005145 | F015477 | N/A | MEIAKAKNELKCAEGDIQKANNRIAFCLSAIHNLTNRDIKE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |