Scaffold Ga0099847_1000010

Overview

Basic Information

• Taxon OID: 3300007540
• Scaffold ID: Ga0099847_1000010
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47359
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022459	Metagenome / Metatranscriptome	214	Y
F045101	Metagenome / Metatranscriptome	153	Y
F102835	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_100001010	F102835	GAG	MKVKIKAELDDEAFKTGDFIQELGKIQEEYFDKLMAKVEKEKWVEGMTKIEIRDWLFDYCFNGRGNDEAGFEDTFSESINKCPKYEVE*
Ga0099847_100001011	F022459	N/A	MNEYEEKENAWQEATDNWVKLTLEKYDRFKPDELTQVFMRGPFAGWSERMVVELAMGMDDANKKVPRHK*
Ga0099847_10000107	F045101	N/A	MKIPIINYIKRYWPLLLVLGLLIFAYTSGTLAVAMKGLLLIPIFTLTACASGLLLRNVYNRTTTDRYVDDKEWINRDWDSLTPWQRILITKIEALTYFAGGALIAAGLVIIINV*