Scaffold Ga0099849_1079160

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1079160
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020791	Metagenome / Metatranscriptome	222	Y
F061370	Metagenome / Metatranscriptome	132	Y
F077967	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_10791601	F061370	GAGG	MAKYTEDYSKMTDEEVVMTYNAVMANAYAGDECALEDEMEKRGIDADYLDEQRIWANCA*
Ga0099849_10791603	F020791	AGGAGG	MFKAIIFIAIGAVGAYLYMNPGDVDGSLEMLKQGVNKGATVIQEATK*
Ga0099849_10791604	F077967	AGGAGG	MLDPKKTFWEDALDVLEGDNEIEQEHVSLDEMYDEETKDNHYVEGIDNWEDWN*