Scaffold Ga0099849_1047080

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1047080
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1806
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_10470802	F039679	N/A	MSAKNSHLTIREDLVEEGLSVPVWFLDYKEDTHVEDTPTLDIDCDYCTDGEELNDWGANIIVKITDPTQKDQYGNPWKDRLAFAISADFDWN*
Ga0099849_10470804	F007770	N/A	MSGEGLSVSFKRIQETAKSNQELLREFQKIIYASPVTRHMKWYGRDHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYESWYQDADLYESHERKDSFVSLARKFANDNALMYFPDGFPAEWIEQETIDGEKHWNHYNVKPDDKNIDKICDVWYRHGIMKLQAFDKELESQIWDDAKTKIKQLMGKKDEGILHCG*
Ga0099849_10470805	F016956	N/A	HIKKVEANPEVETDGDNFDYWNSYQLEDGTYIDYNIYCGDDVGEFTWNNEYKYTDPSEWSWDVACYAVDPPTKDNPYHQIDTDRTNYLFNYNKDGSGKIIFED*