Basic Information | |
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Taxon OID | 3300007539 Open in IMG/M |
Scaffold ID | Ga0099849_1017284 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3160 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062579 | Metagenome | 130 | N |
F063641 | Metagenome | 129 | Y |
F072292 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0099849_10172843 | F063641 | N/A | MEIKISNPDQIPWWLIFEMLEEISYQYSDFSKIVPYKAQFGREGRVYELELKDESNAIVTKATKKR* |
Ga0099849_10172845 | F072292 | N/A | MKKKFKHYAVFINDLGFDEDINERSNSSDCNDIDFFEILAKDEDEMMNIIDVMIDEGILIDDEYDIGESIDVFDLNNYDTNLN* |
Ga0099849_10172847 | F062579 | AGG | MVRIATTSMGSYHASEHYRIQGPFERMVEDNLIVFDRLSDQDIADGELANYDIFFFWNPSHPKSLAYIKAAQLAKCKIWIDFDDNWAEIPMYHPHSWRTNPAFQKELNKKIVSIATVVTVTTEELYQLGKTINPNTYIVPNALPHKITNDYRKKNKVIGWRGSDRHMEDIRHGMKGLIKDSALQYHFVGFSPWYLYDANIDYSYTTWSNSLQEYFNNLYTINMEYCWIPMINNAFNRSVSNIAFLEATSVGAVCIIPEWLEEFNVGHSLWYKNHKELKSILTKIANNELDMVRNRYLTECVKVINEKYVLNETNKIRK |
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