Scaffold Ga0099849_1013240

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1013240
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3654
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F059457	Metagenome	134	Y
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_10132401	F005751	GAG	MSDIYLLDFEPNKLSYQQEELGITFADLDTAVELMKKEEKMIVAELTVYYSRKGGYKNMTELNGLIYSDTKFKDYFDRYEITLKKRNQSKIRFESFKAFRDDLRTKVVNEREMAKHNL*
Ga0099849_10132403	F091013	N/A	MKIKNEINLNSFVIHCKETKYYNVNIKARNYEEAEKRWENIAKRRDYQTLHNEIEVISISEE*
Ga0099849_10132408	F059457	AGGGGG	MNKLPKIGNTELYTVRVLNMSVAQYYGVVKEYNEIVVATRELNKKELEKSGDKGELNLYYSVRYNLNKLVLEKLKGVK*