Scaffold Ga0099849

Basic Information
Taxon OID	3300007539 Open in IMG/M
Scaffold ID	Ga0099849_1011074 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007539 Open in IMG/M

Scaffold ID

Ga0099849_1011074 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4036
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4036

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003661	Metagenome / Metatranscriptome	474	Y
F006109	Metagenome	381	Y
F007971	Metagenome / Metatranscriptome	341	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_101107411	F043896	GGAG	MSQQIADWARQSWGEVIVDQNRADLMNKLYLWDGRDKKDHPLHGTYTGLYLKYTAN*
Ga0099849_101107412	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSAAGTQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPSTAAKKPKLARAKNGPRETARRRLKLVEKRNEPADR*
Ga0099849_101107413	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGFTRSKEDASSWVTYERAIAAARTVAQSFNCDAAVHSVDEPSYPRSWK*
Ga0099849_10110743	F007971	N/A	MAVKAKTGTGRLEHQAGRPKTTRDGYGQHSRPRRRGKKPLRGQGR*
Ga0099849_10110744	F002317	N/A	MEHHEEALITAKPSESPFTQMVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMPVGYSK*
Ga0099849_10110745	F002867	N/A	MSVVHTTDYGNGYSLDQLENERGELYYRACKDSICRYAEDHYIAVMYLENMGWDPTQQAPQ*
Ga0099849_10110747	F003661	GAG	MDPTTAAVLAILVAAGSEIITLLPIKENSWVQLIVKALKVVFPKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099849_1011074

Overview

Ecosystem & Geography

Associated Families

Sequences