Basic Information | |
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Taxon OID | 3300007539 Open in IMG/M |
Scaffold ID | Ga0099849_1011074 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4036 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002317 | Metagenome / Metatranscriptome | 571 | Y |
F002867 | Metagenome / Metatranscriptome | 524 | Y |
F003661 | Metagenome / Metatranscriptome | 474 | Y |
F006109 | Metagenome | 381 | Y |
F007971 | Metagenome / Metatranscriptome | 341 | Y |
F017122 | Metagenome / Metatranscriptome | 242 | Y |
F043896 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099849_101107411 | F043896 | GGAG | MSQQIADWARQSWGEVIVDQNRADLMNKLYLWDGRDKKDHPLHGTYTGLYLKYTAN* |
Ga0099849_101107412 | F017122 | N/A | MEVVPFQEQQDPELRLGEGRSRTSAAGTQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPSTAAKKPKLARAKNGPRETARRRLKLVEKRNEPADR* |
Ga0099849_101107413 | F006109 | N/A | MTRYVVMVEDRWVTAVYGPGKGIGFTRSKEDASSWVTYERAIAAARTVAQSFNCDAAVHSVDEPSYPRSWK* |
Ga0099849_10110743 | F007971 | N/A | MAVKAKTGTGRLEHQAGRPKTTRDGYGQHSRPRRRGKKPLRGQGR* |
Ga0099849_10110744 | F002317 | N/A | MEHHEEALITAKPSESPFTQMVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLETRVRQIEMPVGYSK* |
Ga0099849_10110745 | F002867 | N/A | MSVVHTTDYGNGYSLDQLENERGELYYRACKDSICRYAEDHYIAVMYLENMGWDPTQQAPQ* |
Ga0099849_10110747 | F003661 | GAG | MDPTTAAVLAILVAAGSEIITLLPIKENSWVQLIVKALKVVFPKR* |
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