Scaffold Ga0099849_1007667

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1007667
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4883
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100766710	F011253	AGG	MNNRKSEIDKIIKDMVKNKSLPYANAITKIKKDRKGYFQAKDIKQKQKSLSTDRFQQYLKDIAENDTD*
Ga0099849_10076674	F008915	AGGAGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLVFKDLKLQVRTQIPKNNNSLIIRPKAKPDEFYILVIDEAPKFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN*
Ga0099849_10076677	F004990	GAGG	LAEVDEYFDLKKPCCVCKKGADLREGNKYYCCDHYALYVLGKPMSQIEKELNNE*
Ga0099849_10076679	F001839	GAG	MKYFEKIDKDLINNRALNSHEKLIYIICKSFKNAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKPTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSYPNVINIGKVIK*