Scaffold Ga0099849_1007284

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1007284
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5013
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016061	Metagenome	250	Y
F026258	Metagenome / Metatranscriptome	198	Y
F042075	Metagenome	159	Y
F079995	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_10072841	F016061	AGGAG	MFVKVKAINILNAVTGAKPTIDRKNVRSFNRMGKYYVGQSASGKFLQVNDGKHIRYYGNPFWNLYRVVSKNGNDYVIHEAK*
Ga0099849_10072844	F079995	GGAG	MKHFISHWELQPDTQNTWASVNCANGRAEVIKHIGCWMLEIRFDSGKSHVSSHNTRDEAMRQAEYQAVWTTEFA*
Ga0099849_10072845	F026258	AGGAG	MTTEEKQTLMYGCPQEWIDELIEDWSEPLMGGLQMLAMSMLSDAQERIALGDGDTARQYINRAKYVIRQTREQ*
Ga0099849_10072848	F042075	AGG	MTIHQFTTSEPNPSFAEMRMSSYNDYCFDCDCEGIKPIIWGDFKRLVGELIAVRKYTEAAACMYAQKVAFDRYHSN*