Scaffold Ga0099849_1006389

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1006389
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5369
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F030097	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100638910	F022198	N/A	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIARGKCLAIHESGNIAPLRLKESY*
Ga0099849_10063896	F006684	N/A	MNKIIISYIIASALALGLLNHAVNKAQDDIETLAEVLVHHADTLEDHRGVLLQMIDDLTVPYM*
Ga0099849_10063898	F030097	N/A	MIQTIETAENQTKVSSCMGFVASGAARDAYRRLLTASTVGESKGEQRKSPFSQTAQEKVKK*
Ga0099849_10063899	F009110	GAG	MTESMITSAVRYMESIKDKVPPADEEEIIDKSGTTHMRTLGIDPHEAVKAVDKLREQGMTAKDAYVEVGMTQSQYYKTKKGITNRK*