Scaffold Ga0099849_1005882

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1005882
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5607
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F025731	Metagenome / Metatranscriptome	200	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100588210	F019909	N/A	MTKFEQHIGKQIPKEVLDYMASRTIEQIERQAQKLKFDSWCPLVMENDSPELRKELKQASDLLFQWIDFQSVTK*
Ga0099849_100588211	F032639	N/A	MNKKLINDDGFYVGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDAITYMIEEGQLKTEE*
Ga0099849_100588212	F020115	N/A	MMNNTMTYEQFEILRQWADRVANTANDTDTHIRAIDIVHDIAGILANDEHFLPRL*
Ga0099849_100588213	F025729	N/A	MDKTILDRLVYCEETYAGETETWRDPVTGDYWHVPIRIVRDWDDAMNLNDPN*
Ga0099849_100588217	F025731	N/A	LKINLTSPLNCLIFVVGDSANLNLSLMSHNTDTQRKKAQMASALFNDVQFLSMDAIRNTDVWDSLSCDDQMRLEDLVGQAY*
Ga0099849_10058825	F008453	N/A	MNNYAVYRIFRDWNKRPKVLMENLSREQAQNIVRNTPSEEDSMVVFDEMK*
Ga0099849_10058827	F017473	N/A	MTTQRKEEHIRNIAFCIQNGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDEFIEQNPEIND*
Ga0099849_10058828	F016269	GAG	MKVNDFIFICEEYNIDPAIASEDEGVRKILKTPTSDVNQQLMLSGYLHKNF*