Scaffold Ga0099849_1000661

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1000661
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15926
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (31.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036202	Metagenome / Metatranscriptome	170	N
F043371	Metagenome	156	N
F061821	Metagenome	131	N
F105098	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100066110	F036202	N/A	MFPLYDYANRGKCVHCVFDNKERISPKSVYRIATSAMFSETELGEVRFHYSPVASEHAIGMYDKDGYYCTYCPPIPGAPGAQGLGRWVKHPWAEEEKQRQEAFD*
Ga0099849_100066125	F043371	AGCAG	MTTDITTAQDLIDALLQIREERAELEAREEFIKEQLQGAMALGELDSNQLEEGVYQFSNAKYSRVERSSYKYSKQALKAINAIKEQDVDAGLAERNVTIFWRLNSVI*
Ga0099849_10006618	F061821	N/A	MRNFVAKVHFTIEERDHIDAHAKALNLSRSQLIRLRALGDPTPGVAPAKPQLTQRQYQNAVMASLKASQGSCSRHTCEAITAAVLCTVFQPHDKSASSSHPSQVG*
Ga0099849_10006619	F105098	AGGAGG	MPTKRLTRISTESGARQILQRMIDAGRITVQDLDKAPPGHINPQAYRNLMRDVAQPPKVEVVSPRDLPPAEEPLPF*