Scaffold Ga0099849_1000352

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1000352
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20942
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (37.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006827	Metagenome	364	Y
F018644	Metagenome	234	Y
F055644	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100035210	F006827	N/A	MSEETEEITINYLVYETLDDAIEKADAEGARRGYAYHRIGTGTRYATYPQLTANGKYALMVNGYELTEDEESAITTTVTFPTEEE*
Ga0099849_100035214	F018644	N/A	MIEYIFTNYKDDLLAMSFAYIGIISIIMMFLPKDNFIKKIFKEFASIFTSFFKK*
Ga0099849_100035215	F055644	N/A	MSHEAQTRPLLITEPEYDWDDSITSTVTNLNYFFVPSLPEWAYSEYDGLIYEGVTYEWAEVDYRLSVDYSGVPEPSFVGLFMGFCLLALTLIKRK*