Scaffold Ga0099849_1000178

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1000178
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27547
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (18.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022610	Metagenome / Metatranscriptome	213	Y
F041654	Metagenome / Metatranscriptome	159	N
F079817	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100017821	F079817	N/A	MTVHEISDYFNQSPNMERAYKEQKSIGRLIRSHVFKYNSSRYYEDMDLVYKITYIKTNRNHNLLVNIKVSGTMGRTWRNIKTCVTEYVRLNHSTSRSRNDDIRRAVQGDVQKFFRLFGVDGYNIEIGKIKVCKEL*
Ga0099849_100017825	F022610	N/A	MKIKLTETQLKTVIKNIIAEGGLYGDTSDVVDYDLPEFLSDTIILQSINNWSDVEKSLKELHKRLIRLEKGLDHAGSHNKAYGTGTDYSLKNKRSKDFERASDSIERDEKLKMDIEQLRQDLEL*
Ga0099849_10001785	F041654	GGA	MSLNKIVKNNLKEVKEVKTTRITESKIVKGRLGIISESVNFNSKIQTTKFFNKLFLESKDLINMGITESTINEDLVMVLKGLMGDEGSKVIEMLKERLISYLESKLGMDGFEKDVLTQSIVELDEDEFPKIFTDNRFLARKIADVFTREFKEKFLEGLNDTTKEVLMNQIDNDTFKRELEDKFTTALETLLSSIESNMDSKLKGIRDSVLS*