Scaffold Ga0099851_1052537

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1052537
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F019128	Metagenome / Metatranscriptome	231	Y
F025017	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10525371	F025017	N/A	MNQISYRQGIRSKGFQVTVPTTGAQQTLSLSGLAKSFEGILLSST
Ga0099851_10525373	F002259	AGG	MGMSAQDKMLHVANRLGLTTLKNMQGSTRMVYDSITTASTVHTFFKGAAQRAFPLTNIGANGNQFQVDEALLVEKIGFFIPSATDGIAYAGLGTISVKFDLVIGNKTVIKDASCEFGGEQAFYNDGTVASAVIDLEGVGILIPPQVEYYVVAKPFAGDARTTQSIRLGCYLFGTGALLNFNTTI*
Ga0099851_10525374	F019128	N/A	ALLTNTVGKQLGAGFAPYTGLLGSVATSMFLKQPVIAAGMAGYAGAKIGQSLLGADSAIGSLLAENAYSVSPSMYLQGYDTPGMAGEGIYASNYTLAGYDVPGM*