Scaffold Ga0099851_1040579

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1040579
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F011124	Metagenome / Metatranscriptome	295	Y
F024295	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10405794	F011124	AGGAG	MFDPDKTYGATVWDLSIAVVDFEADDYVRNEDGSIKLFTLPNHDYSYICDDIDVYNLQERDEGDDYDG*
Ga0099851_10405796	F024295	AGGAG	MKYIVELLLTYEVDAPDMRQAQTIAMQRAIDLCDSEDDLFKHIDKDIKCVSSMVRDVSLVDEEIDT*
Ga0099851_10405798	F006094	N/A	LHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGRSEQYAEDTAEDWVMGVRR*