Scaffold Ga0099851_1025420

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1025420
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2386
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020791	Metagenome / Metatranscriptome	222	Y
F061370	Metagenome / Metatranscriptome	132	Y
F077967	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10254202	F061370	GAG	MNYTEDYSKMTDEQLVQTYNAVMANAYPGDECAIEDEMAKRGLEFDEYLP*
Ga0099851_10254204	F020791	AGGAG	MFKAIIFIAIGAVGAYLYMNPGDVDGSLEMLKQGVNKVATLIQEATQ*
Ga0099851_10254205	F077967	AGGAGG	MSDPKKTIWEEALDVIEGDDDIQQEHESLDEMYDEEVKGNDYVEGIDNWEDWN*