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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007538 Open in IMG/M |
| Scaffold ID | Ga0099851_1021278 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2622 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC100P | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Chesapeake Bay, USA | |||||||
| Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004376 | Metagenome / Metatranscriptome | 441 | Y |
| F009440 | Metagenome | 318 | Y |
| F042019 | Metagenome / Metatranscriptome | 159 | N |
| F044199 | Metagenome | 155 | N |
| F058908 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099851_10212782 | F004376 | GAGG | MKCLDCNFDEGTLLKEFDNEKNYSWYELFQMTEVCASCGSENIKTENEDL* |
| Ga0099851_10212784 | F058908 | N/A | MKGPITMDKQQAIKYLYQDWLDYKNYYFKIGFEMKESFIEYLEREIPEYIESEE* |
| Ga0099851_10212787 | F009440 | N/A | MKAKNYKSITEILEKKYKKKFYLFMDFQDCMNRIKQRKSEE* |
| Ga0099851_10212788 | F044199 | GAG | MKGKKTMTQKETIKLIKDAYSSLRVLNNIDWKSYRDDIYNLEKQYEKNHRNYCSGRDFNISIDISAKLFVVQHIASALKGTRHDIKSYIYLKQSIFLAESLVLNYEDKIKEALKDFDLDQLCNLDYSFLIEKKAA* |
| Ga0099851_10212789 | F042019 | GAG | LSLIIITTTKKGKKIMSKGEKLILLVSGEVSISPNFLMEDPNFVRQAKKLISQKLDFYTVKDKLVNWCKNNY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |