Scaffold Ga0099851_1012306

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1012306
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3497
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F008943	Metagenome / Metatranscriptome	325	Y
F041653	Metagenome / Metatranscriptome	159	Y
F065729	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10123062	F065729	GAGG	MKKLEFRPVTITYVRTMMLTPTSETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPPVEIEWGDELEAL*
Ga0099851_10123063	F008943	GGAGG	MKFDGFDWVFLTIPIFIIVAAAVLTYGDQQQRVLFQQTYNKNLECRQSLKDQTVGRVNEICGDVPVIGDFVK*
Ga0099851_10123068	F041653	GAGG	MTETTWPYNHKHSTELWDIAAEILSELSRRDEVTYQVRATPDSVKSKLESL*
Ga0099851_10123069	F004134	N/A	MTKHPANDWEWEDTAEEAFVQWFNDDYGSPYSLRSEWFFGDCKVQDENTLKDLMYKWLHSAFLTGYNTGRCSPKLDDTGCYD*