Scaffold Ga0099851_1011469

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1011469
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3628
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10114692	F001841	GGA	MGQFTPPSFFLGFMRVAAWLLWRDPVKKEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWYRKGVAYEVEEYQIEESDDAPAQFHYIVGTALRQGADVCVLTQYQPAALGVPE*
Ga0099851_10114694	F022190	GGAGG	MSQVQSIEELRFEGDRLVVDAVVDDMVVVIPQTQLEPAEWGPALCRGTLYFSDEDLIPATDAEFRAMLAERVDDWAPLDTSDWDV*
Ga0099851_10114695	F009141	AGGA	MTDAATVPFYRSYLLGGKNIYLDKLSELSDNELNLLNIETLAALEEARREHDAFDNKQGEEAGPAYRRLKIAGYFQAAIKLELQS*
Ga0099851_10114696	F021513	N/A	MKMYILSATQFDQIIKALDDARFALDTYQCIDLDMSGPRQTIPLPAGERLVRTSDVRKPKSQSKTRKSRRKGRAVLTEAKVLEIKRQLAAGGKSVSKIAREFGVHSTTINCIKFGKTWKNVQLQQPAKVVVD*