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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007538 Open in IMG/M |
| Scaffold ID | Ga0099851_1008961 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4137 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Chesapeake Bay, USA | |||||||
| Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001120 | Metagenome / Metatranscriptome | 772 | Y |
| F001165 | Metagenome / Metatranscriptome | 760 | Y |
| F003687 | Metagenome / Metatranscriptome | 473 | Y |
| F007026 | Metagenome | 359 | Y |
| F021097 | Metagenome | 220 | Y |
| F035274 | Metagenome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0099851_100896110 | F003687 | N/A | MNYQAVEHLLTQDARLLARRDSPVIDQEIEADRQAALDLFFKWQDGMAQFQDLMPFCVILQRKVDLNRDLLRWERRHED* |
| Ga0099851_100896111 | F021097 | GGA | MRNHIPVEPCVAVVLGTGLGLLLSVGAQKLLNKHYQETCNERPGHNLVLTQGFLGDTYYCINSKYMN* |
| Ga0099851_10089612 | F001120 | N/A | MTKHKSPINFDKTIAGFNITENGIKSYTKSIKLGPFQLTLNARESGVRGSISIPGTGLSKRNIKII* |
| Ga0099851_10089614 | F001165 | N/A | MTNPNTPRIPDSLDMERLQAMQLVAKMKESAERHGIGFIGGFISPNGEKFVMTNMEDQDDINALMPEDLK* |
| Ga0099851_10089615 | F007026 | N/A | MWCKSQAHVNLNTKPTMEQTQKYPEYPWTRNEYHQLQLVIDALKAICAREDKRHQMDEHLDPHMRNIVEEVIGMLEDEVDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHR* |
| Ga0099851_10089619 | F035274 | N/A | MITIGKEDLDRPIEIFKIDDYYISCKQNVCHLHWVARTEQAREYIDAFYECLDVLIDGEWIDTYGSHEQGNPVSLPDQDYIACRYILATN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |